smiles_to_isoconfs.py
This module generates stereoisomers from SMILES string, using RDKit and reasonable 3D structures using OpenBabel.
Parameter / Method | Tool | Description |
---|---|---|
StereoEnumerationOptions | RDkit | Generate possible stereoisomers for a molecule. |
--gen3d | Open Babel | Generate 3D coordinates. |
--confab | Open Babel | Generate diverse low-energy conformers. |
-m | Open Babel | Convert and store multiple input files. |